| |
|
| |
|
The Hybridization Navigator
displays a list of all hybridizations in the project. |
| |
|
|
| |
|
You can quickly retrieve labeled extract descriptions
for any hybridization in your project. |
| |
|
|
| |
|
A single mouse-click from the
Hybridization Navigator screen takes you to a simulated
false-color image of the chip. |
| |
|
|
| |
|
To get information about a selected
gene, click on its name, and a gene report will be displayed.
|
| |
|
|
| |
|
Scatter plots are used to assess
the quality of the microarray data. |
| |
|
|
| |
|
The M vs. A plot allows for
rapid identification of skewed data. |
| |
|
|
| |
|
A complete set of numerical
and graphical descriptions of hybridization data is available. |
| |
|
|
| |
|
The Probe Set View panel provides tools for querying the
entire project for probe sets with specific attributes. |
| |
|
|
| |
|
The Gene View panel provides tools for querying the entire
project for genes with specific attributes. |
| |
|
|
| |
|
The Data Manager provides quick access to all data sets
created within GeneTraffic. A summary description and
a whole range of data manipulation options is available
for each data set. |
| |
|
|
| |
|
Icons at the bottom of the Data Manager window allow you
to manage Gene Tables, Spot Tables and Gene Lists or to
detect and manage clusters. |
| |
|
|
| |
|
The Create Clusters panel allows you to cluster your data
with hierarchical or k-means methods. |
| |
|
|
| |
|
Clusters can be managed through the Manage Clusters panel.
The panel summarizes cluster generation parameters and
filters. |
| |
|
|
| |
|
The clusters can be visualized here in two or three dimensions
and in a variety of ways. |
| |
|
|
| |
|
Three-dimensional visualization facilitates identification
of regions of interest in a cluster. |
| |
|
|
| |
|
A subset of genes may be selected for visual analysis
by highlighting the corresponding dendogram branch or
the k-means block. |
| |
|
|
| |
|
Users may choose between the dendogram or the k-means
viewing options. |
| |
|
|
| |
|
Protocols and materials required for the annotation of
a microarray experiment (Minimum Information About a Microarray
Experiment). |
| |
|
|
| |
|
Select the appropriate chip type from the list to associate
your project with the uploaded chip definition file (CDF). |
| |
|
|
| |
|
Use the Source screen to define attributes of the biological
source material. |
| |
|
|
| |
|
The hybridization is loaded onto the server from this
multi-component panel containing all relevant information,
including protocol and sample names. |
| |
|
|
| |
|
The original data files
used to create the project may be retrieved from GeneTraffic
at any time. |
| |
|
|
| |
|
The GeneTraffic administrator
has full control over the system. Here, monitoring users
connected to the server. |
