[Click on thumbnails to enlarge]

   
 

The Hybridization Navigator displays a list of all hybridizations in the project.
 
 
 

You can quickly retrieve labeled extract descriptions for any hybridization in your project.
 
 
 

A single mouse-click from the Hybridization Navigator screen takes you to a digitally-enhanced, false-color image of the microarray.
 
 
 

To get information about a selected gene, click on its name, and a gene report will be displayed.
 
 
 

Scatter plots are used to assess the quality of the microarray data.
 
 
 

The M vs. A plot allows for rapid identification of skewed data.
 
 
 

Normalization of microarrays can be achieved by a variety of methods, including LOWESS normalization. All methods are available for the entire hybridization or for sub-grids.
 
 
 

A complete set of numerical and graphical descriptions of hybridization data is available.
 
 
 

The Spot View panel provides tools for querying the entire project for spots with specific attributes.
 
 
 

The Gene View panel provides tools for querying the entire project for genes with specific attributes.
 
 
 

The Data Manager provides quick access to all data sets created within GeneTraffic. A summary description and a whole range of data manipulation options is available for each data set.
 
 
 

Icons at the bottom of the Data Manager window allow you to manage Gene Tables, Spot Tables and Gene Lists or to detect and manage clusters.
 
 
 

The Create Clusters panel allows you to cluster your data with hierarchical or k-means methods.
 
 
 

Clusters can be managed through the Manage Clusters panel. The panel summarizes cluster generation parameters and filters.
 
 
 

The clusters can be visualized here in two or three dimensions and in a variety of ways.
 
 
 

Three-dimensional visualization facilitates identification of regions of interest in a cluster.
 
 
 

A subset of genes may be selected for visual analysis by highlighting the corresponding dendogram branch or the k-means block.
 
 
 

Users may choose between the dendogram or the k-means viewing options.
 
 
 

Protocols and materials required for the annotation of a microarray experiment (Minimum Information About a Microarray Experiment).
 
 
 

Annotate the microarray layout on the array layout definition screen.
 
 
 

Use the Source screen to define attributes of the biological source material.
 
 
 

The hybridization is loaded onto the server from this multi-component panel containing all relevant information, including protocol and sample names.
 
 
 

The original data files used to create the project may be retrieved from GeneTraffic at any time.
 
 
 

The GeneTraffic administrator has full control over the system. Here, monitoring users connected to the server.

 

Home | About Iobion | Products | Support | News | Contact
© 2002 Iobion Informatics LLC